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This treatment protocol will enroll children and young adults ages 12 to 25 years with relapsed or refractory pediatric brain cancer that progressed after previous treatment with indoximod-based chemo-immunotherapy. The primary goal is that combining the study therapies will improve tumor response rate with a reduced or manageable toxicity (side effects). Patients will be treated with 28-day cycle regimen of 4 orals drugs: study drug ibrutinib, study drug indoximod, standard chemotherapy cyclophosphamide and standard chemotherapy etoposide. Patients may continue study therapy up to a maximum of 12 cycles as long as there is stable disease or response and no limiting toxicity.