Experiment Types

  • Whole genome sequencing (WGS)
  • Whole exome sequencing (WES)
  • Target sequencing (TS)
  • Whole transcriptome sequencing (RNA)
  • ChIP-seq for transcription factors (TF-ChIP)
  • ChIP-seq for histone marks (HM-ChIP)
  • Whole genome bisulfite sequencing (WGBS)
  • Reduced representation bisulfite sequencing (RRBS)

Analyses

  • Functional annotation (GO, Pathyway) - ALL
  • NCBI deposit - ALL
  • Quality assessment - ALL
  • Read mapping - ALL
  • Alternative splicing - RNA
  • Differential expression - RNA
  • Expression profile - RNA
  • Gene fusion - RNA
  • Gene set enrichment analysis - RNA
  • Sequence variants - WGS, WES, TS
  • Structure variants - WGS
  • De novo genome assembly - WGS, RNA
  • De novo transcriptome assembly - RNA
  • Methylation profile - WGBS, RRBS
  • Differential methylation - WGBS, RRBS
  • Enrichment identification - TF-ChIP, HM-ChIP
  • Differential enrichment - TF-ChIP, HM-ChIP
  • Sequence motif - TF-ChIP
  • Single Cell Analysis = scRNA & scATAC